Standard
An extremely powerful densitometry package which enables the user to accurately
quantify band and lane material, rapidly determine molecular sizes, use a wide range of
image analysis tools for electrophoresis applications and export images graphics and data
to other Windows software packages. Many of the facilities such as background subtraction,
band detection and data calculation are automatic and there are a wide range of powerful
facilities for handling data from distorted gels. Phoretix 1D Standard does "Set the
Standard in electrophoresis image analysis". |
- Analyses
8, 12, or 16 bit TIFF images from virtually any source.
- Image
Rotation
- Intensity
Calibration - Adjustment for non-linearity of image capture.
- Lane
Identification - Fully adjustable lane drawing with multi-box facilities.
- Background
Subtraction - All Phoretix image and profile methods included.
- Band
Detection - Automatic and manual peak and edge detection with automatic measurement.
- Rf
Determination - Automatic at lane drawing.
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- Molecular
Size and pI Determination with Standards Library - All Phoretix methods including
propagation by Rf, but not those involving matched bands.
- Results
Tables - Lane Measurements, Lane Histograms - Selectable fields.
- Clipboard
any Image Graphics or Data for transfer into other software packages.
- Scaleable
Printing with preview and adjustment facilities.
- Full
Image Attribute Facilities, Commenting and Zoom features.
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Designed for those scientists that need enhanced calibration facilities in quantifying
band material with automatic, non adjustable GLP style reporting. It has all the
facilities of Phoretix 1D Standard, is supplied with a scanner image acquistion /
calibration application, is designed as a multi-user facility, includes a range of
additional features for enhanced reporting and graphics presentations. |
- Manual
Band Matching with “On Image” matching
- Reference
Lane Library.
- Single
Band Data and Comparisons Tables
- Quantity
Calibration - All Phoretix methods using a single graph included.
- Extended
Rf adjustment facilities
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- Single
band histogram aligned on the image.
- GLP
style Reporting Facilities - Automatic Gel and Lane reports with capabilities for some
user input.
- Scanner
application and Image handling facilities (Rotation, Cropping, etc.)
- Multiple
Users and user selection.
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Whilst Phoretix 1D Standard was designed to suit the general needs of most scientists
running electrophoresis gels, the added enhancements of Phoretix 1D Advanced were designed
with consideration to a wide range of specific applications. It is the ideal product for a
busy department with a range of analytical needs, or for individual scientists with
specific high level needs, especially those that involve band pattern matching. |
- Automatic
Band Matching to single or multiple Reference Lanes.
- Extended
Match Editing Facilities.
- Reference
Lane editing
- Dendrograms.
- Normalisation.
- Molecular
Weight propagation via matches.
- MADGE Analysis
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- Link
to Phoretix 1D LDB (if present).
- Dilution
Series Analyses. Multi-graph Quantity Calibration.
- Multiple
Gels per Experiment.
- Display
of any second image with full independent zoom control.
- Additional
automatic reporting of Calibration and Molecular Size determination.
- Future
developments will go into the Full version first.
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This is a new and unique product that combines image analysis and high level database
technology with a specially developed interface that allows a very wide range band pattern
matching, lane relationship determination, database analysis and data subset querying
capabilities. It was developed for several specific applications including taxonomy,
epidemology, variety determination, population studies and other project work. The design
is such that it will be suitable for new novel applications as they arise. |
- Infinite
number of gels and lanes
- Easy
matching configuration and editing
- Various
dendrogram methods and similarity coefficients
- Expandable
Database Tree
- User
defined Libraries of example patterns with annotations
- Comparison
and Results Sets
- User
defined Set Linkage
- Easy
inclusion of data into any Set (Drag and Drop)
- Match
any Set with any Set
- Query on
any part of the database, or any results set, or any selected libraries
- Base
queries on any bands or group of bands
- Adjust
query limits globally or individually
- Flexible
query specification Automatic report generation
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- Graphical
or numerical query generation
- Include
density information as well as positional or name information in queries
- Set
limits to degrees of lane similarity
- Use any
name or annotation information in queries
- Save
results sets
- Automatic
Query Reports
- Several
types of data tables
- Sort any
data in tables with a single mouse click
- View any
pair of lanes with a single mouse click
- View
sets of matching lanes
- Wide
range of band pattern matching facilities
- Easy
adjustment of matching criteria
- Produce
tables of lane relationship similarities
- Produce
different types of dendrograms
- Range of
Dendrogram structure parameters
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